Publications

2024

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A molecular toolkit of cross-feeding strains for engineering synthetic yeast communities

Huadong Peng, Alexander P. S. Darlington, Eric J. South, Hao-Hong Chen, Wei Jiang & Rodrigo Ledesma-Amaro, published in Nature Microbiology | Volume 9 | March 2024 | 848–863


Lab environment, two women looking at a white coloured sheet, wearing white lab coats and lab goggles, two men in the background looking at the same sheet

Efficient synthesis of limonene production in Yarrowia lipolytica by combinatorial engineering strategies

Alīna Reķēna, Marina J. Pinheiro, Nemailla Bonturi, Isma Belouah, Eliise Tammekivi, Koit Herodes, Eduard J. Kerkhoven, Petri-Jaan Lahtvee, published in PLOS Computational Biology


Efficient synthesis of limonene production in Yarrowia lipolytica by combinatorial engineering strategies

Young-Kyoung Park, Lara Sellés Vidal, David Bell, Jure Zabret, Mladen Soldat, Martin Kavšček & Rodrigo Ledesma-Amaro, Published in Biotechnology for Biofuels and Bioproducts, 17(94), 2024.


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PERFECOAT High Performance Bio-based Functional Coatings for Wood and Decorative Applications

Alexander Wentzel conference presentation at EUBCE 2024 in Marseille, France.


2023

The microbial food revolution

Alicia E. Graham & Rodrigo Ledesma-Amaro, published in Nature Communications | (2023)14:2231


Lacktestungsanlage Goldschmidt Evonik

Training the next generation of plastics pollution researchers: tools, skills and career perspectives in an interdisciplinary and transdisciplinary field

Mitrano, Denise; Bigalke, Moritz; Booth, Andy; Catarci Carteny, Camilla; Coffin, Scott; Egger, Matthias; Godikas, Andreas; Hüffer, Thorsten; Koelmans, Albert; Lahive, Elma; Mattsson, Karin; Reynaud, Stefanie; Wagner, Stephan

in Microplastics and Nanoplastics, 3(Article number: 24 (2023)), 01 November 2023.; DOI 10.1186/s43591-023-00072-4


SINTEF Biolab

Spontaneously established syntrophic yeast communities improve bioproduction

Kaur Aulakh, Simran; Sellés Vidal, Lara; Peng, Huadong; Jayasree Varma, Sreejith; Herrera-Dominguez, Lucia; Ralser, Markus; Ledesma-Amaro, Rodrigo

in Nature Chemical Biology volume 19; 29 May 2023; DOI 10.1016/j.scitotenv.2022.160038


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Modular Metabolic Engineering and Synthetic Coculture Strategies for the Production of Aromatic Compounds in Yeast

Huadong Peng; Ruiqi Chen; William M. Shaw; Piotr Hapeta; Wei Jiang; David J. Bell; Tom Ellis; Rodrigo Ledesma-Amaro

in CS Synth. Biol. 2023, 12, 6, 1739–1749; 23 May 2023; DOI 10.1016/j.scitotenv.2022.160038


Evonik Industries, HTE-Anlage, Goldschmidt

Host-aware RNA-based control of synthetic microbial consortia

Alice Boo; Harman Mehta; Rodrigo Ledesma Amaro; Guy-Bart Stan

in bioRxiv; 13 May 2023; DOI 10.1101/2023.05.15.540816


SINTEF Biolab

Vibrio natriegens genome‐scale modeling reveals insights into halophilic adaptations and resource allocation

Lucas Coppens; Tanya Tschirhart; Dagmar H Leary; Sophie M Colston; Jaimee R Compton; William Judson Hervey; Karl L Dana; Gary J Vora; Sergio Bordel; Rodrigo Ledesma‐Amaro

in Molecular Systems Biology (2023), 19; 27 February 2023;
DOI 10.15252/msb.202110523


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A primer to directed evolution: current methodologies and future directions

Lara Sellés Vidal; Mark Isalan; John T. Heap; Rodrigo Ledesma-Amaro

in RSC Chemical Biology, 271-291; 23 January 2023; DOI 10.1039/d2cb00231k


2022

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Inducible expression of large gRNA arrays for multiplexed CRISPRai applications

William M. Shaw, Lucie Studená, Kyler Roy, Piotr Hapeta, Nicholas S. McCarty, Alicia E. Graham, Tom Ellis & Rodrigo Ledesma-Amaro, published in Nature Communications | (2022)13:4984


SINTEF Biolab

High Performance Bio-based Functional Coatings for Wood and Decorative Applications (PERFECOAT)

Skopp, A.; Liu, Y.; Sieber, J.

Poster-Presentation at the Key Technologies in the Bioeconomy Conference, 27–29th September 2022 in Straubing, Germany.


What makes Yarrowia lipolytica well suited for industry?

Park, Young-Kyoung; Ledesma-Amaro, Rodrigo

published in CellPress – Trends in BioTechnology, 41(2), P242-254,05 August 2022, DOI: 10.1016/j.tibtech.2022.07.006


Lacktestungsanlage Goldschmidt Evonik

Resource-aware whole-cell model of division of labour in a microbial consortium for complex-substrate degradation

Eliza Atkinson; Zoltan Tuza; Giansimone Perrino; Guy-Bart Stan; Rodrigo Ledesma-Amaro

in Microbial Cell Factories, Volume 21 (1), p.115 e00200; 14 June, 2022
DOI: 10.1186/s12934-022-01842-0


Development of a dedicated Golden Gate Assembly Platform (RtGGA) for Rhodotorula toruloides

Bonturi, N.; Pinheiro; Monteiro de Oliveira; Rusadze; Eichinge; Liudžiūtė; Sabedotti De Biaggi; Brauer; Remm; Alves Miranda; Ledesma-Amaro; Lahtvee, Petri-Jaan

in Metabolic Engineering Communications, Volume 15, e00200; 23 May 2022


Evonik Industries, HTE-Anlage, Goldschmidt

Generating environmental sampling and testing data for micro- and nanoplastics for use in life cycle impact assessment

C. Askhama; V. H. Pauna; A. Boulay; P. Fantke; O. Jolliet; J. Lavoie; A.M. Booth; C. Coutris; F. Verones; M. Weber; M. G. Vijver; A. Lusher; C. Hajjar

in Science of The Total Environment, Volume 859, Part 2, 10 February 2023, 160038; DOI 10.1016/j.scitotenv.2022.160038